5 recherche sur le mot-clé 'Phylogenetics'   

Analysis of phylogenetics and evolution with R / Paradis, E. (2006)

Public ISBD Titre : Analysis of phylogenetics and evolution with R Type de document : livre Auteurs : Paradis, E., Auteur Editeur : New York : Springer Année de publication : 2006 Collection : Use R! Importance : 211 p. ISBN/ISSN/EAN : 978-0-387-32914-7 Langues : Anglais (eng) Mots-clés : Evolution  Phylogenetics  R (Computer program language) Résumé : The increasing availability of molecular and genetic databases coupled with the growing power of computers gives biologists opportunities to address new issues, such as the patterns of molecular evolution, and re-assess old ones, such as the role of adaptation in species diversification. This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. This open source language is available for a wide range of computer systems and has been adopted as a computational environment by many authors of statistical software. Adopting R as a main tool for phylogenetic analyses will ease the workflow in biologists' data analyses, ensure greater scientific repeatability, and enhance the exchange of ideas and methodological developments. Graduate students and researchers in evolutionary biology can use this book as a reference for data analyses, whereas researchers in bioinformatics interested in evolutionary analyses will learn how to implement these methods in R. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered: manipulation of phylogenetic data, phylogeny estimation, tree drawing, phylogenetic comparative methods, and estimation of ancestral characters. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters. Analysis of phylogenetics and evolution with R [livre] / Paradis, E., Auteur . - New York : Springer, 2006 . - 211 p.. - (Use R!) . ISBN : 978-0-387-32914-7 Langues : Anglais (eng) Mots-clés : Evolution  Phylogenetics  R (Computer program language) Résumé : The increasing availability of molecular and genetic databases coupled with the growing power of computers gives biologists opportunities to address new issues, such as the patterns of molecular evolution, and re-assess old ones, such as the role of adaptation in species diversification. This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. This open source language is available for a wide range of computer systems and has been adopted as a computational environment by many authors of statistical software. Adopting R as a main tool for phylogenetic analyses will ease the workflow in biologists' data analyses, ensure greater scientific repeatability, and enhance the exchange of ideas and methodological developments. Graduate students and researchers in evolutionary biology can use this book as a reference for data analyses, whereas researchers in bioinformatics interested in evolutionary analyses will learn how to implement these methods in R. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered: manipulation of phylogenetic data, phylogeny estimation, tree drawing, phylogenetic comparative methods, and estimation of ancestral characters. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

Exemplaires (1)

Code-barres	Cote	Support	Localisation	Section	Disponibilité
68108	PAR_11_68108	Livre	Salle des ouvrages	11_Mathématiques	Disponible

Handbook of trait-based ecology: from theory to R tools / Francesco de Bello (2021)

Public ISBD Titre : Handbook of trait-based ecology: from theory to R tools Type de document : livre Auteurs : Francesco de Bello, Auteur ; Carlos P. Carmona, Auteur ; André T. C. Dias, Auteur ; Lars Götzenberger, Auteur ; Marco Moretti, Auteur ; Matty P. Berg, Auteur Mention d'édition : 1st ed. Editeur : Cambridge, UK : Cambridge University Press Année de publication : 2021 Importance : 295 p. ISBN/ISSN/EAN : 978-1-108-46075-0 Note générale : DOI:10.1017/9781108628426 Langues : Anglais (eng) Mots-clés : Ecology  Ecophysiology  Phylogenetics  Biodiversity  Theory  Statistical methods  R (Computer program language) Résumé : Le site éditeur indique : Functional ecology is the branch of ecology that focuses on various functions that species play in the community or ecosystem in which they occur. This accessible guide offers the main concepts and tools in trait-based ecology, and their tricks, covering different trophic levels and organism types. It is designed for students, researchers and practitioners who wish to get a handy synthesis of existing concepts, tools and trends in trait-based ecology, and wish to apply it to their own field of interest. Where relevant, exercises specifically designed to be run in R are included, along with accompanying on-line resources including solutions for exercises and R functions, and updates reflecting current developments in this fast-changing field. Based on more than a decade of teaching experience, the authors developed and improved the way theoretical aspects and analytical tools of trait-based ecology are introduced and explained to readers. Handbook of trait-based ecology: from theory to R tools [livre] / Francesco de Bello, Auteur ; Carlos P. Carmona, Auteur ; André T. C. Dias, Auteur ; Lars Götzenberger, Auteur ; Marco Moretti, Auteur ; Matty P. Berg, Auteur  . -  1st ed. . - Cambridge, UK : Cambridge University Press, 2021 . - 295 p. ISBN : 978-1-108-46075-0 DOI:10.1017/9781108628426 Langues : Anglais (eng) Mots-clés : Ecology  Ecophysiology  Phylogenetics  Biodiversity  Theory  Statistical methods  R (Computer program language) Résumé : Le site éditeur indique : Functional ecology is the branch of ecology that focuses on various functions that species play in the community or ecosystem in which they occur. This accessible guide offers the main concepts and tools in trait-based ecology, and their tricks, covering different trophic levels and organism types. It is designed for students, researchers and practitioners who wish to get a handy synthesis of existing concepts, tools and trends in trait-based ecology, and wish to apply it to their own field of interest. Where relevant, exercises specifically designed to be run in R are included, along with accompanying on-line resources including solutions for exercises and R functions, and updates reflecting current developments in this fast-changing field. Based on more than a decade of teaching experience, the authors developed and improved the way theoretical aspects and analytical tools of trait-based ecology are introduced and explained to readers.

Exemplaires (1)

Code-barres	Cote	Support	Localisation	Section	Disponibilité
69870	BEL_15_69870	Livre	Salle des ouvrages	15_Ecologie_générale	Disponible

The largest avian radiation: the evolution of perching birds, or the order Passeriformes / Jon Fjeldsa (2020)  

Public ISBD Titre : The largest avian radiation: the evolution of perching birds, or the order Passeriformes Type de document : livre Auteurs : Jon Fjeldsa, Éditeur scientifique ; Les Christidis ; Per G. P. Ericson, Éditeur scientifique Mention d'édition : 1st ed. Editeur : Barcelona : Lynx Edicions Année de publication : 2020 Importance : 445 p. ISBN/ISSN/EAN : 978-84-16728-33-6 Prix : 85.00 EUR Langues : Anglais (eng) Mots-clés : Passeriformes  Classification  Geographical distribution  Evolution  Phylogenetics Résumé : L'éditeur indique : "This book reveals the remarkable new history of how passerines diversified and dispersed across the entire world. It also presents and explains the new classification, which reflects the phylogenetic history. The new insights reveal that many of the old evolutionary lineages comprise only a few species that remained in their area of origin or underwent limited dispersal. Only a small number of groups underwent significant proliferation of new species and just five (of 145) passerine families are represented on all continents but Antarctica. Even so, the global variation in species richness generally correlates well with the variation in productivity across different environments. We see how a seemingly constant overall rate of evolution of new species is possible because of rapid proliferation in new ecological niches, including archipelagos, and an extraordinary accumulation of endemic species in certain tropical mountain ranges. In addition to describing the revised evolutionary history of passerine birds, the authors try to identify adaptational changes, including shifts in life history strategies, that underlie major evolutionary expansions. Their aim is to further the development of a unified theory to explain how the prodigious variation of Earth’s biodiversity is generated." En ligne : https://www.lynxeds.com/product/the-largest-avian-radiation/ The largest avian radiation: the evolution of perching birds, or the order Passeriformes [livre] / Jon Fjeldsa, Éditeur scientifique ; Les Christidis ; Per G. P. Ericson, Éditeur scientifique  . -  1st ed. . - Barcelona : Lynx Edicions, 2020 . - 445 p. ISBN : 978-84-16728-33-6 : 85.00 EUR Langues : Anglais (eng) Mots-clés : Passeriformes  Classification  Geographical distribution  Evolution  Phylogenetics Résumé : L'éditeur indique : "This book reveals the remarkable new history of how passerines diversified and dispersed across the entire world. It also presents and explains the new classification, which reflects the phylogenetic history. The new insights reveal that many of the old evolutionary lineages comprise only a few species that remained in their area of origin or underwent limited dispersal. Only a small number of groups underwent significant proliferation of new species and just five (of 145) passerine families are represented on all continents but Antarctica. Even so, the global variation in species richness generally correlates well with the variation in productivity across different environments. We see how a seemingly constant overall rate of evolution of new species is possible because of rapid proliferation in new ecological niches, including archipelagos, and an extraordinary accumulation of endemic species in certain tropical mountain ranges. In addition to describing the revised evolutionary history of passerine birds, the authors try to identify adaptational changes, including shifts in life history strategies, that underlie major evolutionary expansions. Their aim is to further the development of a unified theory to explain how the prodigious variation of Earth’s biodiversity is generated." En ligne : https://www.lynxeds.com/product/the-largest-avian-radiation/

Exemplaires (1)

Code-barres	Cote	Support	Localisation	Section	Disponibilité
69776	FJE_04_69776	Livre	Salle des ouvrages	04_Ecologie_animale	Sorti jusqu'au 25/05/2043

Evolutionary pathways in nature: a phylogenetic approach / Avise, John C. (2006)  

Public ISBD Titre : Evolutionary pathways in nature: a phylogenetic approach Type de document : livre Auteurs : Avise, John C., Auteur Mention d'édition : 01 éd. Editeur : New York : Cambridge University Press Année de publication : 2006 Importance : 286 p. ISBN/ISSN/EAN : 978-0-521-67417-1 Note générale : Inventaire 2008: Pointé et ré-emprunté le 21/01/2008 Langues : Anglais (eng) Mots-clés : Evolutionary theory  Phylogenetics  Phylogeny Résumé : Reconstructing phylogenetic trees from DNA sequences has become a popular exercise in many branches of biology, and here the well-known geneticist John Avise explains why. Molecular phylogenies provide a genealogical backdrop for interpreting the evolutionary histories of many other types of biological traits (anatomical, behavioral, ecological, physiological, biochemical and even geographical). Guiding readers on a natural history tour along dozens of evolutionary pathways, the author describes how creatures ranging from microbes to elephants came to possess their current phenotypes. Essential reading for college students, professional biologists and anyone interested in natural history and biodiversity, this book is packed with fascinating examples of evolutionary puzzles from across the animal kingdom; how the toucan got its enormous bill, how reptiles grow back lost limbs and why Arctic fish don't freeze. [résumé éditeur] Note de contenu : Pbk; En ligne : http://books.google.fr/books?id=9if9GRL6i4UC&dq=evolutionary+pathways+in+nature& [...] Evolutionary pathways in nature: a phylogenetic approach [livre] / Avise, John C., Auteur  . -  01 éd. . - New York : Cambridge University Press, 2006 . - 286 p. ISBN : 978-0-521-67417-1 Inventaire 2008: Pointé et ré-emprunté le 21/01/2008 Langues : Anglais (eng) Mots-clés : Evolutionary theory  Phylogenetics  Phylogeny Résumé : Reconstructing phylogenetic trees from DNA sequences has become a popular exercise in many branches of biology, and here the well-known geneticist John Avise explains why. Molecular phylogenies provide a genealogical backdrop for interpreting the evolutionary histories of many other types of biological traits (anatomical, behavioral, ecological, physiological, biochemical and even geographical). Guiding readers on a natural history tour along dozens of evolutionary pathways, the author describes how creatures ranging from microbes to elephants came to possess their current phenotypes. Essential reading for college students, professional biologists and anyone interested in natural history and biodiversity, this book is packed with fascinating examples of evolutionary puzzles from across the animal kingdom; how the toucan got its enormous bill, how reptiles grow back lost limbs and why Arctic fish don't freeze. [résumé éditeur] Note de contenu : Pbk; En ligne : http://books.google.fr/books?id=9if9GRL6i4UC&dq=evolutionary+pathways+in+nature& [...]

Exemplaires (1)

Code-barres	Cote	Support	Localisation	Section	Disponibilité
68227	Avi_9_68227	Livre	Salle des ouvrages	09_Génétique_Evolution	Disponible

The phylogenetic handbook: a practical approach to DNA and protein phylogeny / Salemi, M.(Ed.) ; Vandamme, A.-M.(Ed.) (2003)  

Public ISBD Titre : The phylogenetic handbook: a practical approach to DNA and protein phylogeny Type de document : livre Auteurs : Salemi, M.(Ed.) ; Vandamme, A.-M.(Ed.) Mention d'édition : 1st ed. Editeur : Cambridge : Cambridge University Press Année de publication : 2003 Importance : 406 p. ISBN/ISSN/EAN : 978-0-521-80390-8 Note générale : Voir la 2ème édition de 2009 à la cote 68554/9 Langues : Anglais (eng) Mots-clés : DNA  Handbook  Phylogenetics  Phylogeny  Proteins Résumé : The Phylogenetic Handbook is a broad introduction to the theory and practice of nucleotide and amino acid phylogenetic analysis. As a unique feature of this book, each chapter contains an extensive practical section, in which step-by-step exercises on real data sets introduce the reader to the most widely-used phylogeny software including CLUSTAL, PHYLIP, PAUP, DAMBE, TREE-PUZZLE, TREECON, SplitsTree, TreeView, SimPlot, MEGA2, PAML, and BOOTSCANNING. Chapters 1-10 provide a strong background in basic topics such as the use of sequence databases, alignment algorithms, tree-building methods, estimation of genetic distances, and testing models of evolution. Additional chapters briefly survey special topics in evolution, for example modelling evolution with networks, studying recombination, testing for positive selection, and methods in population genetics. The book will be an invaluable resource for advanced level undergraduate and graduate students, as well as for professionals working in the fields of molecular biology and evolution. En ligne : http://books.google.fr/books?id=rVgyCE156JgC&printsec=frontcover The phylogenetic handbook: a practical approach to DNA and protein phylogeny [livre] / Salemi, M.(Ed.) ; Vandamme, A.-M.(Ed.)  . -  1st ed. . - Cambridge : Cambridge University Press, 2003 . - 406 p. ISBN : 978-0-521-80390-8 Voir la 2ème édition de 2009 à la cote 68554/9 Langues : Anglais (eng) Mots-clés : DNA  Handbook  Phylogenetics  Phylogeny  Proteins Résumé : The Phylogenetic Handbook is a broad introduction to the theory and practice of nucleotide and amino acid phylogenetic analysis. As a unique feature of this book, each chapter contains an extensive practical section, in which step-by-step exercises on real data sets introduce the reader to the most widely-used phylogeny software including CLUSTAL, PHYLIP, PAUP, DAMBE, TREE-PUZZLE, TREECON, SplitsTree, TreeView, SimPlot, MEGA2, PAML, and BOOTSCANNING. Chapters 1-10 provide a strong background in basic topics such as the use of sequence databases, alignment algorithms, tree-building methods, estimation of genetic distances, and testing models of evolution. Additional chapters briefly survey special topics in evolution, for example modelling evolution with networks, studying recombination, testing for positive selection, and methods in population genetics. The book will be an invaluable resource for advanced level undergraduate and graduate students, as well as for professionals working in the fields of molecular biology and evolution. En ligne : http://books.google.fr/books?id=rVgyCE156JgC&printsec=frontcover

Exemplaires (1)

Code-barres	Cote	Support	Localisation	Section	Disponibilité
68172	SAL_09_68172	Livre	Salle des ouvrages	09_Génétique_Evolution	Disponible